Agilent technologies g2505c surescan highresolution dna microarray scanner. Beckman coulter ad 340 microplate reader analyzer absorbance detector tested. Transcriptome analysis console tac software thermo. For affymetrix tiling arrays, snpscanner is supported. The genechip scanner 3000 7g system allows you to scan nextgeneration higherdensity for snp.
Affymetrix 428 array scanner the 428 scanner can analyze any microarray on a glass slide 25x75x1mm that has been probed with dna labeled with cy3, or cy5 as well as other common fluorescent dyes. Affymetrix genechip scanner 3000 targeted genotyping system equipnet. Microarray analysis software microarray data analysis data sheet. Microarray technology is a powerful tool for genetic research that utilizes nucleic acid hybridization techniques and recent advancements in computing technology to evaluate the mrna expression profile of thousands of genes within a single experiment. The features on affymetrix arrays are incredibly small about 8 microns across. Scanner products may be covered by one or more of the following patents. Microarray scanners highquality array scanning systems illumina. Pdf sop describing scanning of hybridised affymetrix biochips, to create gene expression raw data files, using affymetrix software find, read and cite all the. I am asking for a tool or online software for micoarray analysis affymetrix doing the normalization and annotation,online or free trial. The surescan dx microarray scanner system, consisting of surescan dx microarray scanner with autoloader and agilent microarray scan control software, is intended to measure fluorescence signals of labeled dna and rna target hybridized to microarrays. Operating both the fluidics station and the gcs 3000 7g scanner, genechip image acquisition and. The double scan improves assay sensitivity and reduces. Genechip operating software gcos service pack 2 software update tiling array tools integrated genome browser affymetrix software support policy carrierscan reporter analysis software automated axiom analysis software microarray instruments. The genepix 4000b microarray scanner is a benchmark for quality, reliability and easeofuse in microarray scanning technology.
The web application dmaps provides a userfriendly interface to researchers performing studies based on microarrays. These files are produced by the array scanner software. Accepted processed microarray files formats emblebi. Competitors in the dna microarray business include illumina, ge healthcare, applied biosystems, beckman coulter, eppendorf biochip systems, and agilent. The program was developed to manage and process one or twocolor microarray data obtained from several platforms currently, genetac, scanarray, codelink, nimblegen and.
Microarray scanners are widely used in functional biology, cellomics, gene expression and drug discovery research. Affymetrix genechip command console software agcc genechip data. Affymetrix genechip 3000 7g microarray scanner autoloader. Sensovation offers different models of multiplexenabled imaging readers for automated microarray analysis.
Highperformance microarray scanners and accessories. There are also various inexpensive plasticbased technologies under development in small. Illumina iscan microarray scanner computer pc with software new. The software calculates an average of the two images, defines the probe cells and computes an intensity for each cell. Affymetrix cytoscan dx software microarray analysis. It is designed for use with genechip systems, and can accommodate future advancements in the technology. Agilent, molecular devices, arrayit, life technologies, and more. Genechip command console software provides an intuitive set of tools for. Tips on hybridizing, washing, and scanning affymetrix. The surescan dx microarray scanner system is indicated for.
Affymetrix genechip command console software agcc is the latest generation of instrument control software for genechip systems. Acuity 4 software imports standard tabdelimited text files, making it easy to import microarray data, experimental descriptions and substance annotations from any source into the acuity database. Affymetrix genechip scanner 3000 microarray dna genetics 7g 000073. Affymetrix is dedicated to developing stateoftheart technology for acquiring, analyzing. Pdf software and tools for microarray data analysis. The agilent surescan scanner is an advanced microarray scanner system for research.
Oligonucleotide 2080mer oligos is synthesized either in situ onchip or by conventional synthesis followed by onchip immobilization historically called dna chips developed at affymetrix, inc. Microarray suite software is part of the affymetrix genechip. Affymetrix genechip 3000 7g system with pc and software installed complete, working system its easy to find untested, individual components of a genechip system on the preowned market, but good luck finding a complete system that has actually been tested by knowledgeable technicians. Genomestudio software enables you to visualize and analyze microarray data generated on illumina platforms. Pdf use of affymetrix software to scan hybridised gene chips to. Affymetrix genechip 3000 system with pc and software installed complete, working system its easy to find untested, individual components of a genechip system on the preowned market, but good luck finding a complete system that has actually been tested by knowledgeable technicians. Genotyping enables researchers to explore variants such as snps and unbalanced structural dna changes, and gain insight into the functional effects of genetic. The genomics core laboratory provides comprehensive services and resources for the gene expression analysis using affymetrix genechip technology. An end to end workflow for differential gene expression. Affymetrix genechip scanner 3000 complete system this listing is for a. The capitalbio luxscan 10ka confocal microarray scanner is a compact, high performance duallaser scanner system for microarray imaging and data analysis of dna, protein, cell and tissue arrays. Affymetrix genechip 3000 microarray scanner autoloader oven 640 fluidics 450. The scanner produces a tiff image file and an excel spreadsheet file with the data so that it can be analyzed in any number of different programs. This item is a affymetrix 428 array scanner with the following.
This system includes the genechip scanner 3000 7g plus with autoloader, two. Available instrumentation includes an affymetrix gcs 3000 7g scanner, two genechip fluidics station 450 and two genechip hybridization oven 645. Genotyping system scanner 3000 7g wholegenome association system. Detailed analysis is now at the fingertips of every researcher, regardless of access to bioinformatics resources. Affymetrix genechip operating software is a software system for managing affymetrix microarray data. Post a free wanted ad today if you need to locate lab equipment. With the affymetrix suite of software solutions, you can establish biological relevance to your data through data analysis, mining, and management solutions. Each model is available in different versions for specialized applications. Software and tools for microarray data analysis article pdf available in methods in molecular biology clifton, n.
The genechip scanner 3000 is produced by the industry pioneer that invented the dna microarray and scanner. We accept either native processed files from microarray scanner software e. Microarray analysis software thermo fisher scientific us. Arraya microarray is a glass substrate with oligonuc leotide probes. Expertise for your preimplantation genetic screening pgs and microarray projects. For additional help, see entering results for a single array.
Transcriptome analysis console tac software thermo fisher. By way of comparison, a human hair is about 50 microns wide. A computer workstation has software for statistical analysis and bioinformatics of genomic data. Affymetrix microarray suite manual computational biology and. Cytogenomic microarrays offer a simple, reliable method for assessing chromosomal aberrations at a higher resolution. Full import of affymetrix cel, chp, cdf and dat files of all versions are. Affymetrix genechip scanner 3000 with autoloader andbio. The software defines the probe cells and computes an intensity for each cell. Each workstation running affymetrix microarray suite can control one scanner. Designed for the biologist, tac software allows you to.
In this article, we walk through an endtoend affymetrix microarray differential expression workflow using bioconductor packages. The arrays were scanned with a hewlett packard genearray scanner. Genechip command console software thermo fisher scientific us. Microarray scanners highquality array scanning systems. Affymetrix genechip scanner 3000 targeted genotyping. Maximize throughput to thousands of samples per day. Photon gear g250560270 green telescope agilent dna microarray scanner. Affymetrix purple wave is selling a used office supplies and equip. Luxscan 10ka microarray scanner core life sciences. Affymetrix genechip 3000 microarray scanner autoloader oven 640 fluidics 450 complete, working system.
Equipment affymetrix microarray nebraska center for. Its easy to find untested, individual components of a genechip system on the preowned market. Log onto the computer and start up gcos affymetrix software that runs the fluidics station and the scanner. A method for quantifying the performance of a dna microarray scanner. When buying a microarray scanner, important features to consider are sensitivity, resolution, scan area, rapidity of scan, and ease of use. Technology affymetrix microarray nebraska center for.
The genepix 4000b microarray scanner from molecular devices is a benchmark for quality, reliability and easeofuse in microarray scanning technology. This includes assistance with experimental design and statistical analysis, as well as access to software. Affymetrix genechip scanner 3000 7g plus targeted genotyping. Command console software provides an intuitive set of tools for instrument control and data management used in the processing of genechip arrays. The software package is composed of discrete application modules that enable you to obtain a comprehensive view of the genome, gene expression, and gene regulation. The 10k array, which is a piece of glass about the size of a thumbnail, has over 400,000 squares. Make offer illumina iscan microarray scanner computer pc with software new. Each probe array is scanned twice, taking up to ten minutes, depending on the array format. Affymetrix microarray scanner oven assembly 600575 wcopley stl. Coupled with genepix promicroarray image analysis software and acuity microarray informatics software, the genepix system sets the highest standards in the acquisition and analysis of data from all types of. Pumadb, the princeton university microarray database, stores raw and.
This fourthgeneration affymetrix scanner is designed to give researchers peak scanning performance for a broad range of applications, including rna expression and dna analysis. This workflow is directly applicable to current gene type arrays, e. Transcriptome analysis console software provides visualizations of complex. Coupled with genepix pro microarray image analysis software and acuity microarray informatics software, the genepix system sets the highest standards in the acquisition and analysis of data from all types of arrays, including nucleic acids. The microarray scanner is a sophisticated laserinduced. Array also typically refers to the array cartridge. Microarray scanners microarray scanner systems biocompare.
Agilent g5761a surescan dx microarray scanner system. Discover more about how the surescan dx scanner provides a complete microarray solution, offering outstanding sensitivity and resolution. Affymetrix developers network web pages contain archived web talks on the. The agilent surescan dx microarray scanner is ceivd marked for diagnostic use in the eu, iceland, korea, norway, singapore, and switzerland. Affymetrix genechip 3000 dx scanner autoloader lab.
A plastic cartridge surrounds and protects the array and forms the array cartridge. Acuity 4 microarray informatics software molecular devices. Used affymetrix genechip scanner 3000 scanner for sale. Buy and sell, new and used microarray scanners at labx using auctions and classifieds. Microarray printer microarray spotter microarrayer 1 microarray scanner accessories 2 microarray scanners microarray scanner systems 16 back to. Computer workstation and genechip operating software gcos. Data acquisition and analysis software for microarray images. The surescan dx microarray scanner system has been validated for use with agilent g3 gene expression and cytogenetic. Affymetrix genechip 3000 system with pc and software installed complete, working system. Leverages proven affymetrix genechip technology and utilizes the. Affymetrix genechip scanner 3000 with autoloader affymetrix gene chip scanner 3000 pn 000073 the genechip scanner 3000 is a product extension of the genechip scanner 3000 series that allows nextgeneration higher density arrays, enabling new applications for genotyping with up to 500,000 snps, tiling arrays for transcription, and allexon arrays for wholegenome analysis. Affymetrix is dedicated to developing stateoftheart technology for acquiring, analyzing, and managing complex genetic information for use in biomedical research.
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